Antioxidant Analysis of Kawa Daun (Coffea canephora) Beverage by In Vitro and In Silico Approaches

https://doi.org/10.22146/ijc.69422

Ifwarisan Defri(1), Nurheni Sri Palupi(2), Setyanto Tri Wahyudi(3), Nancy Dewi Yuliana(4*)

(1) Department of Food Science and Technology, IPB University, IPB Dramaga Campus, Bogor 16680, Indonesia; Department of Food Technology, UPN “Veteran” Jawa Timur, Surabaya 60294, Indonesia
(2) Department of Food Science and Technology, IPB University, IPB Dramaga Campus, Bogor 16680, Indonesia
(3) Department of Physics, Faculty of Mathematical and Natural Sciences, IPB University, IPB Dramaga Campus, Bogor 16680, Indonesia
(4) Department of Food Science and Technology, IPB University, IPB Dramaga Campus, Bogor 16680, Indonesia
(*) Corresponding Author

Abstract


In Tanah Datar Regency, West Sumatra, Indonesia, the waste of pruning coffee leaves (Coffea canephora) is utilized as a traditional beverage called "Kawa Daun". For a consistent quality of Kawa Daun functional beverage, we evaluated the effect of different smoking times (0, 2, 4, and 6 h) on its in vitro DPPH antioxidant activity. Estimation of antioxidant components from the coffee leaf was conducted in silico using Peroxiredoxin V (PrxV) with 3MNG code as a receptor, and 33 phytochemicals were reported to be present in the coffee leaves as ligands. As a result, Kawa Daun, with a 2-h smoking time, had the highest antioxidant activity. Molecular docking between PrxV and the 33 compounds resulted in the ten most potential compounds based on the affinity energy. They were xanthone (-4.9 kcal/mol), uric acid (-4.8 kcal/mol), xanthosine (-4.8 kcal/mol), caffeine (-4.6 kcal/mol), 3-methylxanthine (-4.6 kcal/mol), 7-methylxanthosine (-4.6 kcal/mol), theobromine (-4.5 kcal/mol), theophylline (-4.5 kcal/mol), caffeic acid (-4.5 kcal/mol), and xanthine (-4.4 kcal/mol). These ten ligands had stronger interactions than the control ligand 1.2-dithiane-4.5-diol (-3.6 kcal/mol). This research showed the potential of Kawa Daun as a functional beverage with antioxidant activity. Further confirmation on the antioxidant potential of this beverage using an in vivo method is recommended.


Keywords


functional beverage; peroxiredoxin V; coffee leaves; Kawa Daun; smoking time

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References

[1] Defri, I., Palupi, N.S., and Yuliana, N.D., 2021, Physicochemical and sensory characteristics of Kawa Daun from West Sumatra at different smoking time, Proceedings of the International Seminar on Promoting Local Resources for Sustainable Agriculture and Development (ISPLRSAD 2020), Atlantis Press, 113–125.

[2] Yin, Y., Katahira, R., and Ashihara, H., 2015, Metabolism of purine alkaloids and xanthine in leaves of maté (Ilex paraguariensis), Nat. Prod. Commun., 10 (5), 707–712.

[3] Mizuno, K., Kato, M., Irino, F., Yoneyama, N., Fujimura, T., and Ashihara, H., 2003, The first committed step reaction of caffeine biosynthesis: 7-Methylxanthosine synthase is closely homologous to caffeine synthases in coffee (Coffea arabica L.), FEBS Lett., 547 (1-3), 56–60.

[4] Nayeem, N., Denny, G., and Mehta, S.K., 2011, Comparative phytochemical analysis, antimicrobial and antioxidant activity of the methanolic extracts of the leaves of Coffea Arabica and Coffea Robusta, Pharm. Lett., 3 (1), 292–297.

[5] Vitória, A.P., and Mazzafera, P., 1999, Xanthine degradation and related enzyme activities in leaves and fruits of two Coffea species differing in caffeine catabolism, J. Agric. Food Chem., 47 (5), 1851–1855.

[6] Monteiro, Â., Colomban, S., Azinheira, H.G., Guerra-Guimarães, L., Do Céu Silva, M., Navarini, L., and Resmini, M., 2020, Dietary antioxidants in coffee leaves: Impact of botanical origin and maturity on chlorogenic acids and xanthones, Antioxidants, 9 (1), 6.

[7] Hall, A., Parsonage, D., Poole, L.B., and Karplus, P.A., 2010, Structural evidence that peroxiredoxin catalytic power is based on transition-state stabilization, J. Mol. Biol., 402 (1), 194–209.

[8] Sutomo, S., and Pratama, M.R.F., 2020, Measuring the potential antioxidant activity of methyl gallate: Molecular docking study, Thai J. Pharm. Sci., 44 (1), 14–22.

[9] Nemallapudi, B.R., Zyryanov, G.V., Avula, B., Guda, M.R., Cirandur, S.R., Venkataramaiah, C., Rajendra, W., and Gundala, S., 2019, Meglumine as a green, efficient and reusable catalyst for synthesis and molecular docking studies of bis(indolyl)methanes as antioxidant agents, Bioorg. Chem., 87, 465–473.

[10] Hasanah, M., Maharani, B., and Munarsih, E., 2017, Daya antioksidan ekstrak dan fraksi daun kopi robusta (Coffea robusta) terhadap pereaksi DPPH (2,2-difenil-1-pikrilhidrazil), IJPST, 4 (2), 42–49.

[11] Gómez-Ruiz, J.Á., Leake, D.S., and Ames, J.M., 2007, In vitro antioxidant activity of coffee compounds and their metabolites, J. Agric. Food Chem., 55 (17), 6962–6969.

[12] Novita, R., Kasim, A., Anggraini, T., and Putra, D.P., 2018, Kahwa daun: Traditional knowledge of a coffee leaf herbal tea from West Sumatera, Indonesia, J. Ethn. Foods, 5 (4), 286–291.

[13] Salazar-Aranda, R., Pérez-López, L.A., López-Arroyo, J., Alanís-Garza, B.A., and Waksman de Torres, N., 2011, Antimicrobial and antioxidant activities of plants from northeast of Mexico, Evidence-Based Complementary Altern. Med., 2011, 536139.

[14] Hosseini, F.S., and Amanlou, M., 2020, Anti-HCV and anti-malaria agent, potential candidates to repurpose for coronavirus infection: Virtual screening, molecular docking, and molecular dynamics simulation study, Life Sci., 258, 118205.

[15] Boenzi, F., Digiesi, S., Mossa, G., Mummolo, G., and Romano, V.A., 2013, Optimal break and job rotation schedules of high repetitive - low load manual tasks in assembly lines: An OCRA - based approach, IFAC Proc. Vol., 46 (9), 1896–1901.

[16] Goddard, T.D., Huang, C.C., Meng, E.C., Pettersen, E.F., Couch, G.S., Morris, J.H., and Ferrin, T.E., 2018, UCSF ChimeraX: Meeting modern challenges in visualization and analysis, Protein Sci, 27 (1), 14–25.

[17] DeLano, W.L., and Bromberg, S., 2004, PyMOL User's Guide, Delano Scientific LLC, California.

[18] Laskowski, R.A., and Swindells, M.B., 2011, LigPlot+: Multiple ligand-protein interaction diagrams for drug discovery, J. Chem. Inf. Model., 51 (10), 2778–2786.

[19] Badarinath, A.V., Rao, K.M., Madhusudhana, C.C., Ramkanth, S., Rajan, T.V.S., and Gnanaprakash, K., 2010, A review on in-vitro antioxidant methods: Comparisions, correlations and considerations, Int. J. PharmTech Res., 2 (2), 1276–1285.

[20] Defri, I., Rahmi, I.D., and Asben, A., 2019, The effect on extraction time of Kawa Daun grounds (Coffea cannephora) using ultrasonic towards bioactive components, Seminar Nasional Bioteknologi IV Universitas Gadjah Mada, Universitas Gadjah Mada, Yogyakarta, 2 November 2019, 72–90.

[21] Choi, S., Jung, S., and Ko, K.S., 2018, Effects of coffee extracts with different roasting degrees on antioxidant and anti-inflammatory systems in mice, Nutrients, 10 (3), 363.

[22] Chaaban, H., Ioannou, I., Chebil, L., Slimane, M., Gerardin, C., Paris, C., Charbonnel, C., Chekir, L., and Ghoul, M., 2017, Effect of heat processing on thermal stability and antioxidant activity of six flavonoids, J. Food Process. Preserv., 41 (5), e13203.

[23] Yuliana, N.D., Sugiharto, M.A., Lioe, H.N., Goto, M., and Ishikawa, Y.T., 2018, NMR metabolomics revealed metabolites and bioactivity variation in Torbangun leaves Plectranthus amboinicus L. with different origins, Indones. J. Biotechnol., 23 (2), 91–101.

[24] Ngamsuk, S., Huang, T.C., and Hsu, J.L. 2019, Determination of phenolic compounds, procyanidins, and antioxidant activity in processed Coffea arabica L. leaves, Foods, 8 (9), 389.

[25] Chen, X., Mu, K., and Kitts, D.D., 2019, Characterization of phytochemical mixtures with inflammatory modulation potential from coffee leaves processed by green and black tea processing methods, Food Chem., 271, 248–258.

[26] Prieto-Martínez, F.D., Arciniega, M., and Medina-Franco, J.L., 2018, Acoplamiento molecular: Avances recientes y retos, TIP, 21, 65–97.

[27] Gohlke, H., and Klebe, G., 2002, Approach to the description and prediction of the binding affinity of small-molecule ligands to macromolecular receptors, Angew. Chem., Int. Ed., 41 (15), 2644–2676.

[28] Syahbanu, F., Giriwono, P.E., Tjandrawinata, R.R., and Suhartono, M.T., 2020, Molecular analysis of a fibrin-degrading enzyme from Bacillus subtilis K2 isolated from the Indonesian soybean-based fermented food moromi, Mol. Biol. Rep., 47 (11), 8553–8563.

[29] Li, M.H., Luo, Q., Xue, X.G., and Li, Z.S., 2011, Molecular dynamics studies of the 3D structure and planar ligand binding of a quadruplex dimer, J. Mol. Model., 17 (3), 515–526.

[30] Akhlaghi, M., and Bandy, B., 2009, Mechanisms of flavonoid protection against myocardial ischemia-reperfusion injury, J. Mol. Cell. Cardiol., 46 (3), 309–317.

[31] Chen, X.M., Ma, Z., and Kitts, D.D., 2018, Effects of processing method and age of leaves on phytochemical profiles and bioactivity of coffee leaves, Food Chem., 249, 143–153.

[32] Segheto, L., Santos, B.C.S., Werneck, A.F.L., Vilela, F.M.P., de Sousa, O.V., and Rodarte, M.P., 2018, Antioxidant extracts of ceffee leaves and its active ingredients 5-caffeoylquinic acid reduce chemically-induced inflammation in mice, Ind. Crops Prod., 126, 48–57.

[33] Ding, J., Mei, S., Gao, L., Wang, Q., Ma, H., and Chen, X, 2022, Tea processing steps affect chemical compositions, enzyme activities, and antioxidant and anti-inflammatory activities of coffee leaves, Food Front., 00, 1–12.



DOI: https://doi.org/10.22146/ijc.69422

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